Merge branch 'develop' into feature/JAL-3187linkedFeatures

[jalview.git] / src / jalview / api / ComplexAlignFile.java

diff --git a/src/jalview/api/ComplexAlignFile.java b/src/jalview/api/ComplexAlignFile.java
index 4ac08cf..1b579ad 100644 (file)
--- a/src/jalview/api/ComplexAlignFile.java
+++ b/src/jalview/api/ComplexAlignFile.java
@@ -20,9 +20,8 @@
  */
 package jalview.api;
 
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.ColourSchemeI;
 
 /**
  * This interface should be implemented by complex file parser with the ability
@@ -44,14 +43,14 @@ public interface ComplexAlignFile
    * 
    * @return
    */
-  public ColourSchemeI getColourScheme();
+  public String getGlobalColourScheme();
 
   /**
    * Retrieves the Column selection/hidden column from a complex file parser
    * 
    * @return
    */
-  public ColumnSelection getColumnSelection();
+  public HiddenColumns getHiddenColumns();
 
   /**
    * Retrieves hidden sequences from a complex file parser