+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.api;
import jalview.datamodel.SequenceFeature;
*/
boolean isGraduatedColour();
- void setGraduatedColour(boolean b);
-
/**
* Returns the feature colour (when isGraduatedColour answers false)
*
void setThreshold(float f);
+ /**
+ * Answers true if the colour varies between the actual minimum and maximum
+ * score values of the feature, or false if between absolute minimum and
+ * maximum values (or if not a graduated colour).
+ *
+ * @return
+ */
boolean isAutoScaled();
void setAutoScaled(boolean b);
* @param max
*/
void updateBounds(float min, float max);
+
+ /**
+ * Returns the colour in Jalview features file format
+ *
+ * @return
+ */
+ String toJalviewFormat(String featureType);
}