Merge: 497958b 68dcaa7

[jalview.git] / src / jalview / api / FeatureRenderer.java

diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java
index df8fe84..4fd89c1 100644 (file)
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,16 +1,38 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
 
+import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
 
 /**
  * Abstract feature renderer interface
+ * 
  * @author JimP
- *
+ * 
  */
 public interface FeatureRenderer
 {
@@ -19,4 +41,38 @@ public interface FeatureRenderer
 
   void featuresAdded();
 
+  Object getFeatureStyle(String ft);
+
+  void setColour(String ft, Object ggc);
+
+  AlignViewportI getViewport();
+
+  FeaturesDisplayedI getFeaturesDisplayed();
+
+  Map<String,Object> getFeatureColours();
+
+  void findAllFeatures(boolean newMadeVisible);
+
+  Map<String,Object> getDisplayedFeatureCols();
+
+  List<String> getFeatureGroups();
+
+  List<String> getGroups(boolean visible);
+
+  void setGroupVisibility(List<String> toset, boolean visible);
+
+  void setGroupVisibility(String group, boolean visible);
+
+  List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
+
+  boolean isTransparencyAvailable();
+
+  String[] getDisplayedFeatureTypes();
+
+  String[] getDisplayedFeatureGroups();
+
+  void setAllVisible(List<String> featureTypes);
+
+  void setVisible(String featureType);
+
 }