/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.api;
+import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
/**
* Abstract feature renderer interface
void featuresAdded();
+ Object getFeatureStyle(String ft);
+
+ void setColour(String ft, Object ggc);
+
+ AlignViewportI getViewport();
+
+ FeaturesDisplayedI getFeaturesDisplayed();
+
+ Map<String,Object> getFeatureColours();
+
+ void findAllFeatures(boolean newMadeVisible);
+
+ Map<String,Object> getDisplayedFeatureCols();
+
+ List<String> getFeatureGroups();
+
+ List<String> getGroups(boolean visible);
+
+ void setGroupVisibility(List<String> toset, boolean visible);
+
+ void setGroupVisibility(String group, boolean visible);
+
+ List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
+
+ boolean isTransparencyAvailable();
+
+ String[] getDisplayedFeatureTypes();
+
+ String[] getDisplayedFeatureGroups();
+
+ void setAllVisible(List<String> featureTypes);
+
+ void setVisible(String featureType);
+
}