/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.api;
+import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
/**
* Abstract feature renderer interface
void featuresAdded();
+ Object getFeatureStyle(String ft);
+
+ void setColour(String ft, Object ggc);
+
+ AlignViewportI getViewport();
+
+ FeaturesDisplayedI getFeaturesDisplayed();
+
+ Map<String,Object> getFeatureColours();
+
+ void findAllFeatures(boolean newMadeVisible);
+
+ Map<String,Object> getDisplayedFeatureCols();
+
+ List<String> getFeatureGroups();
+
+ List<String> getGroups(boolean visible);
+
+ void setGroupVisibility(List<String> toset, boolean visible);
+
+ void setGroupVisibility(String group, boolean visible);
+
+ List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
+
+ boolean isTransparencyAvailable();
+
+ String[] getDisplayedFeatureTypes();
+
+ String[] getDisplayedFeatureGroups();
+
+ void setAllVisible(List<String> featureTypes);
+
+ void setVisible(String featureType);
+
}