Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

[jalview.git] / src / jalview / api / FeatureRenderer.java

diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java
index 679cded..79911d9 100644 (file)
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,9 +20,13 @@
  */
 package jalview.api;
 
+import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
 
 /**
  * Abstract feature renderer interface
@@ -37,4 +41,38 @@ public interface FeatureRenderer
 
   void featuresAdded();
 
+  Object getFeatureStyle(String ft);
+
+  void setColour(String ft, Object ggc);
+
+  AlignViewportI getViewport();
+
+  FeaturesDisplayedI getFeaturesDisplayed();
+
+  Map<String,Object> getFeatureColours();
+
+  void findAllFeatures(boolean newMadeVisible);
+
+  Map<String,Object> getDisplayedFeatureCols();
+
+  List<String> getFeatureGroups();
+
+  List<String> getGroups(boolean visible);
+
+  void setGroupVisibility(List<String> toset, boolean visible);
+
+  void setGroupVisibility(String group, boolean visible);
+
+  List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
+
+  boolean isTransparencyAvailable();
+
+  String[] getDisplayedFeatureTypes();
+
+  String[] getDisplayedFeatureGroups();
+
+  void setAllVisible(List<String> featureTypes);
+
+  void setVisible(String featureType);
+
 }