import jalview.ws.sifts.SiftsException;
import jalview.xml.binding.sifts.Entry.Entity;
+import java.util.HashMap;
import java.util.HashSet;
+// JBPComment: this isn't a top-level Jalview API - should be in its own package api
+
public interface SiftsClientI
{
/**
*/
public String getDbCoordSys();
- /**
- * Get DB Evidence for the SIFTs Entry
- *
- * @return
- */
- public String getDbEvidence();
/**
* Get DB Source for the SIFTs Entry
* @param accessionId
* @return
*/
- public boolean isFoundInSiftsEntry(String accessionId);
-
- /**
- * Get the standard DB referenced by the SIFTs Entry
- *
- * @return
- */
- public String[] getEntryDBs();
+ public boolean isAccessionMatched(String accessionId);
/**
*
* @return generated mapping
* @throws Exception
*/
- public int[][] getGreedyMapping(String entityId, SequenceI seq,
+ public HashMap<Integer, int[]> getGreedyMapping(String entityId,
+ SequenceI seq,
java.io.PrintStream os) throws SiftsException;
}
\ No newline at end of file