import jalview.ws.sifts.SiftsException;
import jalview.xml.binding.sifts.Entry.Entity;
+import java.util.HashMap;
import java.util.HashSet;
public interface SiftsClientI
* @param accessionId
* @return
*/
- public boolean isFoundInSiftsEntry(String accessionId);
+ public boolean isAccessionMatched(String accessionId);
/**
* Get the standard DB referenced by the SIFTs Entry
* @return generated mapping
* @throws Exception
*/
- public int[][] getGreedyMapping(String entityId, SequenceI seq,
+ public HashMap<Integer, int[]> getGreedyMapping(String entityId,
+ SequenceI seq,
java.io.PrintStream os) throws SiftsException;
}
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