+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.api.structures;
-import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
-import jalview.api.SequenceStructureBinding;
-import jalview.datamodel.AlignmentI;
+import jalview.api.AlignmentViewPanel;
+import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
-import jalview.ext.jmol.JalviewJmolBinding;
-import jalview.structure.StructureMappingcommandSet;
-import jalview.structure.StructureSelectionManager;
+import jalview.schemes.ColourSchemeI;
+import jalview.structures.models.AAStructureBindingModel;
public interface JalviewStructureDisplayI
{
- SequenceStructureBinding getBinding();
+ AAStructureBindingModel getBinding();
/**
- * @return true if there is an active GUI handling a structure display
+ * @return true if there is an active GUI handling a structure display
*/
boolean isVisible();
/**
- * enable or disable the structure display - note this might just hide or show a GUI element, but not actually reset the display
+ * enable or disable the structure display - note this might just hide or show
+ * a GUI element, but not actually reset the display
+ *
* @param b
*/
void setVisible(boolean b);
/**
- * free up any external resources that were used by this display and collect garbage
+ * free up any external resources that were used by this display and collect
+ * garbage
*/
void dispose();
/**
- * shutdown any structure viewing processes started by this display
+ * Shutdown any Jalview structure viewing processes started by this display
+ *
+ * @param closeExternalViewer
+ * if true, force close any linked external viewer process
*/
- void closeViewer();
+ void closeViewer(boolean closeExternalViewer);
+ /**
+ * apply a colourscheme to the structures in the viewer
+ *
+ * @param colourScheme
+ */
+ void setJalviewColourScheme(ColourSchemeI colourScheme);
+
+ /**
+ *
+ * @return true if all background sequence/structure binding threads have
+ * completed for this viewer instance
+ */
+ boolean hasMapping();
+
+ // construction method - move to another interface ?
+ boolean addAlreadyLoadedFile(SequenceI[] seq, String[] chains,
+ AlignmentViewPanel apanel, String pdbId);
+
+ // construction method - move to another interface ?
+ boolean addToExistingViewer(PDBEntry pdbentry, SequenceI[] seq,
+ String[] chains, AlignmentViewPanel apanel, String pdbId);
+
+ /**
+ * refresh GUI after reconfiguring structure(s) and alignment panels
+ */
+ void updateTitleAndMenus();
}