showConservation, quality, identity not used

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index dca9da4..4972874 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -143,7 +143,6 @@ public class APopupMenu
         else\r
           url = link.substring(link.lastIndexOf("|")+1);\r
 \r
-        System.out.println("add "+url +" "+target);\r
            item.addActionListener(new java.awt.event.ActionListener()\r
            {\r
                public void actionPerformed(ActionEvent e)\r
@@ -233,7 +232,7 @@ public class APopupMenu
     else if(source==cut)\r
       ap.alignFrame.cut_actionPerformed();\r
     else if(source==toUpper || source==toLower || source==toggleCase)\r
-    {\r
+    {/*\r
       SequenceGroup sg = ap.av.getSelectionGroup();\r
       if (sg != null)\r
       {\r
@@ -270,7 +269,7 @@ public class APopupMenu
         while (end < sg.getEndRes());\r
         }\r
         ap.seqPanel.seqCanvas.repaint();\r
-      }\r
+      }*/\r
     }\r
     else\r
       outputText(evt);\r
@@ -639,7 +638,7 @@ public class APopupMenu
         }\r
         else if(!representGroup)\r
         {\r
-          hseqs[index++] = sg.getSequenceAt(index);\r
+          hseqs[index++] = sg.getSequenceAt(i);\r
         }\r
         }\r
 \r