/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
Menu editMenu = new Menu(MessageManager.getString("action.edit"));
- MenuItem copy = new MenuItem(MessageManager.getString("label.jalview_copy"));
+ MenuItem copy = new MenuItem(
+ MessageManager.getString("label.jalview_copy"));
MenuItem cut = new MenuItem(MessageManager.getString("label.jalview_cut"));
- MenuItem toUpper = new MenuItem(MessageManager.getString("label.to_upper_case"));
+ MenuItem toUpper = new MenuItem(
+ MessageManager.getString("label.to_upper_case"));
- MenuItem toLower = new MenuItem(MessageManager.getString("label.to_lower_case"));
+ MenuItem toLower = new MenuItem(
+ MessageManager.getString("label.to_lower_case"));
- MenuItem toggleCase = new MenuItem(MessageManager.getString("label.toggle_case"));
+ MenuItem toggleCase = new MenuItem(
+ MessageManager.getString("label.toggle_case"));
Menu outputmenu = new Menu();
MenuItem repGroup = new MenuItem();
- MenuItem sequenceName = new MenuItem(MessageManager.getString("label.edit_name_description"));
+ MenuItem sequenceName = new MenuItem(
+ MessageManager.getString("label.edit_name_description"));
- MenuItem sequenceFeature = new MenuItem(MessageManager.getString("label.create_sequence_feature"));
+ MenuItem sequenceFeature = new MenuItem(
+ MessageManager.getString("label.create_sequence_feature"));
- MenuItem editSequence = new MenuItem(MessageManager.getString("label.edit_sequence"));
+ MenuItem editSequence = new MenuItem(
+ MessageManager.getString("label.edit_sequence"));
- MenuItem sequenceDetails = new MenuItem(MessageManager.getString("label.sequence_details") + "...");
+ MenuItem sequenceDetails = new MenuItem(
+ MessageManager.getString("label.sequence_details") + "...");
- MenuItem selSeqDetails = new MenuItem(MessageManager.getString("label.sequence_details") + "...");
+ MenuItem selSeqDetails = new MenuItem(
+ MessageManager.getString("label.sequence_details") + "...");
Sequence seq;
if (sg != null && sg.getSize() > 0)
{
- editGroupName.setLabel(MessageManager.formatMessage("label.name_param", new String[]{sg.getName()}));
+ editGroupName.setLabel(MessageManager.formatMessage(
+ "label.name_param", new String[]
+ { sg.getName() }));
showText.setState(sg.getDisplayText());
showColourText.setState(sg.getColourText());
showBoxes.setState(sg.getDisplayBoxes());
{
menu1.setLabel(MessageManager.getString("action.edit_new_group"));
groupMenu.remove(unGroupMenuItem);
- } else {
+ }
+ else
+ {
menu1.setLabel(MessageManager.getString("action.edit_group"));
groupMenu.remove(createGroupMenuItem);
}
if (seq != null)
{
seqMenu.setLabel(seq.getName());
- repGroup.setLabel(MessageManager.formatMessage("label.represent_group_with", new String[]{seq.getName()}));
+ repGroup.setLabel(MessageManager.formatMessage(
+ "label.represent_group_with", new String[]
+ { seq.getName() }));
}
else
{
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame,
- MessageManager.formatMessage("label.selection_output_command", new String[]{e.getActionCommand()}),600, 500);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.formatMessage(
+ "label.selection_output_command", new String[]
+ { e.getActionCommand() }), 600, 500);
// JBPNote: getSelectionAsNewSequence behaviour has changed - this method
// now returns a full copy of sequence data
// TODO consider using getSequenceSelection instead here
cap.setText(new jalview.io.AppletFormatAdapter().formatSequences(
- e.getActionCommand(),
- new Alignment(ap.av.getSelectionAsNewSequence()),
- ap.av.showJVSuffix));
+ e.getActionCommand(),
+ ap.av.showJVSuffix, ap.av, true));
}
StringBuffer contents = new StringBuffer();
for (SequenceI seq : sequences)
{
- contents.append(MessageManager.formatMessage("label.annotation_for_displayid",new String[]{seq.getDisplayId(true)}));
+ contents.append(MessageManager.formatMessage(
+ "label.annotation_for_displayid", new String[]
+ { seq.getDisplayId(true) }));
new SequenceAnnotationReport(null)
.createSequenceAnnotationReport(
contents,
jalview.bin.JalviewLite.addFrame(frame, "Sequence Details for "
+ (sequences.length == 1 ? sequences[0].getDisplayId(true)
: "Selection"), 600, 500);
- cap.setText(MessageManager.formatMessage("label.html_content", new String[]{contents.toString()}));
+ cap.setText(MessageManager.formatMessage("label.html_content",
+ new String[]
+ { contents.toString() }));
}
void editName()
cap.setPDBImport(seq);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame,
- MessageManager.formatMessage("label.paste_pdb_file_for_sequence", new String[]{seq.getName()}), 400, 300);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.formatMessage(
+ "label.paste_pdb_file_for_sequence", new String[]
+ { seq.getName() }), 400, 300);
}
}
sequenceFeature.addActionListener(this);
editGroupName.addActionListener(this);
- unGroupMenuItem.setLabel(MessageManager.getString("action.remove_group"));
+ unGroupMenuItem.setLabel(MessageManager
+ .getString("action.remove_group"));
unGroupMenuItem.addActionListener(this);
- createGroupMenuItem.setLabel(MessageManager.getString("action.create_group"));
+ createGroupMenuItem.setLabel(MessageManager
+ .getString("action.create_group"));
createGroupMenuItem.addActionListener(this);
- nucleotideMenuItem.setLabel(MessageManager.getString("label.nucleotide"));
+ nucleotideMenuItem.setLabel(MessageManager
+ .getString("label.nucleotide"));
nucleotideMenuItem.addActionListener(this);
conservationMenuItem.addItemListener(this);
abovePIDColour.addItemListener(this);
colourMenu.setLabel(MessageManager.getString("label.group_colour"));
- showBoxes.setLabel(MessageManager.getString("label.boxes"));
+ showBoxes.setLabel(MessageManager.getString("action.boxes"));
showBoxes.setState(true);
showBoxes.addItemListener(this);
sequenceName.addActionListener(this);
sequenceDetails.addActionListener(this);
selSeqDetails.addActionListener(this);
- displayNonconserved.setLabel(MessageManager.getString("label.show_non_conversed"));
+ displayNonconserved.setLabel(MessageManager
+ .getString("label.show_non_conversed"));
displayNonconserved.setState(false);
displayNonconserved.addItemListener(this);
- showText.setLabel(MessageManager.getString("label.text"));
+ showText.setLabel(MessageManager.getString("action.text"));
showText.addItemListener(this);
showColourText.setLabel(MessageManager.getString("label.colour_text"));
showColourText.addItemListener(this);
seqMenu.setLabel(MessageManager.getString("label.sequence"));
pdb.setLabel(MessageManager.getString("label.view_pdb_structure"));
hideSeqs.setLabel(MessageManager.getString("action.hide_sequences"));
- repGroup.setLabel(MessageManager.formatMessage("label.represent_group_with", new String[]{""}));
+ repGroup.setLabel(MessageManager.formatMessage(
+ "label.represent_group_with", new String[]
+ { "" }));
revealAll.setLabel(MessageManager.getString("action.reveal_all"));
revealSeq.setLabel(MessageManager.getString("action.reveal_sequences"));
- menu1.setLabel(MessageManager.getString("label.group")+":");
+ menu1.setLabel(MessageManager.getString("label.group") + ":");
add(groupMenu);
this.add(seqMenu);
this.add(hideSeqs);