"Group Description",\r
ap.alignFrame,\r
"Edit Group Name / Description",\r
- 500,100);\r
+ 500,100, true);\r
\r
if (dialog.accept)\r
{\r
\r
ap.alignFrame,\r
"Edit Sequence",\r
- 500, 100);\r
+ 500, 100, true);\r
\r
if (dialog.accept)\r
{\r
EditCommand editCommand = new EditCommand(\r
"Edit Sequences", EditCommand.REPLACE,\r
- dialog.getName(),\r
+ dialog.getName().replace(' ', ap.av.getGapCharacter()),\r
sg.getSequencesAsArray(ap.av.hiddenRepSequences),\r
sg.getStartRes(), sg.getEndRes()+1, ap.av.alignment\r
);\r
}\r
\r
if (ap.seqPanel.seqCanvas.getFeatureRenderer()\r
- .createNewFeatures(seqs, features, ap))\r
+ .amendFeatures(seqs, features, true, ap))\r
{\r
ap.alignFrame.sequenceFeatures.setState(true);\r
ap.av.showSequenceFeatures(true);\r
"Sequence Description",\r
ap.alignFrame,\r
"Edit Sequence Name / Description",\r
- 500,100);\r
+ 500,100, true);\r
\r
if (dialog.accept)\r
{\r
\r
if ( ap.av.applet.jmolAvailable )\r
new jalview.appletgui.AppletJmol(entry,\r
- new Sequence[]\r
- {seq},\r
+ new Sequence[]{seq},\r
+ null,\r
ap,\r
AppletFormatAdapter.URL);\r
else\r
-\r
new MCview.AppletPDBViewer(entry,\r
- new Sequence[]\r
- {seq},\r
+ new Sequence[]{seq},\r
+ null,\r
ap,\r
AppletFormatAdapter.URL);\r
\r