added mechanism to initiate DAS feature fetching programmatically from jalview.bin...

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 072621b..803f323 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -307,7 +307,7 @@ public class APopupMenu
           "Group Description",\r
           ap.alignFrame,\r
           "Edit Group Name / Description",\r
-          500,100);\r
+          500,100, true);\r
 \r
       if (dialog.accept)\r
       {\r
@@ -342,13 +342,13 @@ public class APopupMenu
 \r
                                                    ap.alignFrame,\r
                                                    "Edit Sequence",\r
-                                                   500, 100);\r
+                                                   500, 100, true);\r
 \r
         if (dialog.accept)\r
         {\r
           EditCommand editCommand = new EditCommand(\r
               "Edit Sequences", EditCommand.REPLACE,\r
-              dialog.getName(),\r
+              dialog.getName().replace(' ', ap.av.getGapCharacter()),\r
               sg.getSequencesAsArray(ap.av.hiddenRepSequences),\r
               sg.getStartRes(), sg.getEndRes()+1, ap.av.alignment\r
               );\r
@@ -499,7 +499,7 @@ public class APopupMenu
         "Sequence Description",\r
         ap.alignFrame,\r
         "Edit Sequence Name / Description",\r
-        500,100);\r
+        500,100, true);\r
 \r
     if (dialog.accept)\r
     {\r
@@ -517,14 +517,14 @@ public class APopupMenu
 \r
       if ( ap.av.applet.jmolAvailable )\r
        new jalview.appletgui.AppletJmol(entry,\r
-                                        new Sequence[]\r
-                                        {seq},\r
+                                        new Sequence[]{seq},\r
+                                        null,\r
                                         ap,\r
                                         AppletFormatAdapter.URL);\r
      else\r
        new MCview.AppletPDBViewer(entry,\r
-                                  new Sequence[]\r
-                                  {seq},\r
+                                  new Sequence[]{seq},\r
+                                  null,\r
                                   ap,\r
                                   AppletFormatAdapter.URL);\r
 \r