SequenceGroup parsing added to annotation file

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 0c0f562..8f1836c 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -326,22 +326,6 @@ public class APopupMenu
   void outputText(ActionEvent e)\r
   {\r
     CutAndPasteTransfer cap = new CutAndPasteTransfer(true, ap.alignFrame);\r
-    Vector vseqs = new Vector();\r
-\r
-      String [] selection = ap.av.getViewAsString(true);\r
-      SequenceI [] seqs = ap.av.getSelectionAsNewSequence();\r
-      if (selection != null)\r
-      {\r
-        for (int i = 0; i < selection.length; i++)\r
-        {\r
-          Sequence seq = new Sequence(\r
-              seqs[i].getName(),\r
-              selection[i],\r
-              seqs[i].getStart(), seqs[i].getEnd());\r
-          seq.setDescription(seqs[i].getDescription());\r
-          vseqs.addElement( seq );\r
-      }\r
-    }\r
 \r
     Frame frame = new Frame();\r
     frame.add(cap);\r
@@ -351,7 +335,7 @@ public class APopupMenu
 \r
     cap.setText(new jalview.io.AppletFormatAdapter().formatSequences(\r
         e.getActionCommand(),\r
-        vseqs,\r
+      new Alignment( ap.av.getSelectionAsNewSequence() ),\r
         ap.av.showJVSuffix));\r
 \r
   }\r