-1 from east scale, wrapped alignment

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index c90af98..b85c7d2 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -181,9 +181,9 @@ public class APopupMenu
 \r
   void addPDB(Sequence seq)\r
   {\r
-    CutAndPasteTransfer cap = new CutAndPasteTransfer(true, ap.alignFrame.applet);\r
+    CutAndPasteTransfer cap = new CutAndPasteTransfer(true, ap.alignFrame);\r
     cap.setText("Paste your PDB file here.");\r
-    cap.setPDBImport(seq, ap.seqPanel.seqCanvas);\r
+    cap.setPDBImport(seq);\r
     Frame frame = new Frame();\r
     frame.add(cap);\r
     jalview.bin.JalviewLite.addFrame(frame, "Paste PDB file ", 400, 300);\r
@@ -269,16 +269,6 @@ public class APopupMenu
 \r
   void refresh()\r
   {\r
-    SequenceGroup sg = getGroup();\r
-    if(sg!=null)\r
-    {\r
-      SuperGroup superG = ap.av.alignment.getSuperGroup(sg);\r
-\r
-      if (superG != null)\r
-      {\r
-        superG.setSuperGroupProperties(sg);\r
-      }\r
-        }\r
     ap.seqPanel.seqCanvas.repaint();\r
     if(ap.overviewPanel!=null)\r
       ap.overviewPanel.updateOverviewImage();\r