RepresentGroup count items

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index 76fec4f..dca9da4 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -197,7 +197,7 @@ public class APopupMenu
       helixColour_actionPerformed();\r
     else if(source==strandColour)\r
       strandColour_actionPerformed();\r
-    else if(source==clustalColour)\r
+    else if(source==turnColour)\r
       turnColour_actionPerformed();\r
     else if(source==buriedColour)\r
       buriedColour_actionPerformed();\r
@@ -630,19 +630,18 @@ public class APopupMenu
     hseqs = new SequenceI[ representGroup ? gsize-1 : gsize ];\r
 \r
       int index = 0;\r
-      while(index < gsize)\r
+      for(int i=0; i<gsize; i++)\r
       {\r
-        if(representGroup && sg.getSequenceAt(index)!=seq)\r
+        if(representGroup && sg.getSequenceAt(i)!=seq)\r
         {\r
-          seq.addHiddenSequence(sg.getSequenceAt(index));\r
-          hseqs[index] = sg.getSequenceAt(index);\r
+          seq.addHiddenSequence(sg.getSequenceAt(i));\r
+          hseqs[index++] = sg.getSequenceAt(i);\r
         }\r
         else if(!representGroup)\r
         {\r
-          hseqs[index] = sg.getSequenceAt(index);\r
+          hseqs[index++] = sg.getSequenceAt(index);\r
+        }\r
         }\r
-        index ++;\r
-      }\r
 \r
       ap.av.hideSequence(hseqs);\r
 \r