remove mentions of non-functional RNAInteraction colourscheme

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 6826266..04e86fa 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1036,10 +1036,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {\r
       changeColour(new PurinePyrimidineColourScheme());\r
     }\r
-    else if (source == RNAInteractionColour)\r
-    {\r
-      changeColour(new RNAInteractionColourScheme());\r
-    }\r
+\r
     else if (source == RNAHelixColour)\r
     {\r
       new RNAHelicesColourChooser(viewport, alignPanel);\r
@@ -3271,7 +3268,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     colourMenu.add(buriedColour);\r
     colourMenu.add(nucleotideColour);\r
     colourMenu.add(purinePyrimidineColour);\r
-    colourMenu.add(RNAInteractionColour);\r
+    //    colourMenu.add(RNAInteractionColour);\r
     colourMenu.add(tcoffeeColour);\r
     colourMenu.add(userDefinedColour);\r
     colourMenu.addSeparator();\r
@@ -3732,10 +3729,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
    * @throws InterruptedException\r
    * @throws ExceptionUnmatchedClosingParentheses\r
    */\r
-  public boolean loadScoreFile(String source) throws IOException,\r
-          ExceptionFileFormatOrSyntax, ParserConfigurationException,\r
-          SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed,\r
-          InterruptedException, ExceptionUnmatchedClosingParentheses\r
+  public boolean loadScoreFile(String source) throws Exception\r
   {\r
 \r
     TCoffeeScoreFile file = new TCoffeeScoreFile(source,\r