Colours in viewport

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 6586a68..147c2dd 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -980,6 +980,7 @@ public void itemStateChanged(ItemEvent evt)
   protected void deleteGroups_actionPerformed()\r
   {\r
     viewport.alignment.deleteAllGroups();\r
+    viewport.sequenceColours.clear();\r
     viewport.setSelectionGroup(null);\r
 \r
     alignPanel.repaint();\r