public void PCAMenuItem_actionPerformed()
{
// are the sequences aligned?
- if (!viewport.alignment.isAligned())
+ if (!viewport.alignment.isAligned(false))
{
SequenceI current;
int Width = viewport.getAlignment().getWidth();
void NewTreePanel(String type, String pwType, String title)
{
// are the sequences aligned?
- if (!viewport.alignment.isAligned())
+ if (!viewport.alignment.isAligned(false))
{
SequenceI current;
int Width = viewport.getAlignment().getWidth();