Merge branch 'jims_marckhacks' into develop

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 5e6df04..2e39b10 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -53,6 +53,7 @@ import jalview.schemes.NucleotideColourScheme;
 import jalview.schemes.PIDColourScheme;
 import jalview.schemes.PurinePyrimidineColourScheme;
 import jalview.schemes.RNAHelicesColourChooser;
+import jalview.schemes.RNAInteractionColourScheme;\r
 import jalview.schemes.ResidueProperties;
 import jalview.schemes.StrandColourScheme;
 import jalview.schemes.TCoffeeColourScheme;
@@ -1044,6 +1045,10 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {
       changeColour(new PurinePyrimidineColourScheme());
     }
+    else if (source == RNAInteractionColour)\r
+    {\r
+      changeColour(new RNAInteractionColourScheme());\r
+    }\r
     else if (source == RNAHelixColour)
     {
       new RNAHelicesColourChooser(viewport, alignPanel);
@@ -2831,6 +2836,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
 
   MenuItem purinePyrimidineColour = new MenuItem();
 
+  MenuItem RNAInteractionColour = new MenuItem();\r
+\r
   MenuItem RNAHelixColour = new MenuItem();
 
   MenuItem userDefinedColour = new MenuItem();
@@ -3038,6 +3045,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     buriedColour.addActionListener(this);
     purinePyrimidineColour.setLabel(MessageManager.getString("label.purine_pyrimidine"));
     purinePyrimidineColour.addActionListener(this);
+    RNAInteractionColour.setLabel(MessageManager.getString("label.rna_interaction"));\r
+    RNAInteractionColour.addActionListener(this);\r
     RNAHelixColour.setLabel(MessageManager.getString("action.by_rna_helixes"));
     RNAHelixColour.addActionListener(this);
     userDefinedColour.setLabel(MessageManager.getString("action.user_defined"));
@@ -3264,6 +3273,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     colourMenu.add(buriedColour);
     colourMenu.add(nucleotideColour);
     colourMenu.add(purinePyrimidineColour);
+    //    colourMenu.add(RNAInteractionColour);\r
     colourMenu.add(tcoffeeColour);
     colourMenu.add(userDefinedColour);
     colourMenu.addSeparator();