patch to fix occasional arrayoutofbounds exception when working with hidden columns...

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 13c40ef..3e214b8 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -2374,7 +2374,20 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {
       try
       {
-        System.out.println("Show url: " + url);
+        if (url.indexOf(":")==-1)
+        {
+          // TODO: verify (Bas Vroling bug) prepend codebase or server URL to form valid URL
+          if (url.indexOf("/")==0)
+          {
+            String codebase = viewport.applet.getCodeBase().toString();
+            url = codebase.substring(0,codebase.length()-viewport.applet.getCodeBase().getFile().length())+url;
+          } else {
+            url = viewport.applet.getCodeBase()+url;
+          }
+          System.out.println("Show url (prepended codebase): " + url);
+        } else {
+          System.out.println("Show url: " + url);
+        }
         viewport.applet.getAppletContext().showDocument(
                 new java.net.URL(url), target);
       } catch (Exception ex)