import jalview.schemes.TurnColourScheme;
import jalview.schemes.ZappoColourScheme;
import jalview.structure.StructureSelectionManager;
+import jalview.structures.models.AAStructureBindingModel;
import jalview.util.MessageManager;
import java.awt.BorderLayout;
{
new AnnotationColourChooser(viewport, alignPanel);
}
+ else if (source == annotationColumnSelection)
+ {
+ new AnnotationColumnChooser(viewport, alignPanel);
+ }
else if (source == sortPairwiseMenuItem)
{
sortPairwiseMenuItem_actionPerformed();
{
copiedHiddenColumns = new Vector();
int hiddenOffset = viewport.getSelectionGroup().getStartRes();
- for (int i = 0; i < viewport.getColumnSelection().getHiddenColumns()
- .size(); i++)
+ for (int[] region : viewport.getColumnSelection().getHiddenColumns())
{
- int[] region = (int[]) viewport.getColumnSelection()
- .getHiddenColumns().elementAt(i);
-
copiedHiddenColumns.addElement(new int[]
{ region[0] - hiddenOffset, region[1] - hiddenOffset });
}
annotationColour.setLabel(MessageManager
.getString("action.by_annotation"));
annotationColour.addActionListener(this);
+
+ annotationColumnSelection.setLabel("Select by Annotation");
+ annotationColumnSelection.addActionListener(this);
+
invertSequenceMenuItem.setLabel(MessageManager
.getString("action.invert_sequence_selection"));
invertColSel.setLabel(MessageManager
selectMenu.add(unGroup);
selectMenu.add(grpsFromSelection);
selectMenu.add(deleteGroups);
+ selectMenu.add(annotationColumnSelection);
}
MenuItem annotationColour = new MenuItem();
+ MenuItem annotationColumnSelection = new MenuItem();
+
MenuItem invertColSel = new MenuItem();
Menu menu1 = new Menu();
return null;
}
}
- ExtJmol jmv = null;
+ AAStructureBindingModel jmv = null;
// TODO: search for a jmv that involves viewer
if (jmv == null)
{ // create a new viewer/jalview binding.