git://source.jalview.org / jalview.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
Export annotations with properties
[jalview.git] / src / jalview / appletgui / AlignFrame.java
diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 4ee6e27..57a09ef 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -868,7 +868,8 @@ public class AlignFrame
   {\r
     String annotation = new AnnotationFile().printAnnotations(\r
         viewport.showAnnotation ? viewport.alignment.getAlignmentAnnotation() : null,\r
-        viewport.alignment.getGroups());\r
+        viewport.alignment.getGroups(),\r
+         ((Alignment)viewport.alignment).alignmentProperties);\r
 \r
     if (displayTextbox)\r
     {\r