this.addKeyListener(this);\r
alignPanel.seqPanel.seqCanvas.addKeyListener(this);\r
alignPanel.idPanel.idCanvas.addKeyListener(this);\r
+ alignPanel.scalePanel.addKeyListener(this);\r
+ alignPanel.annotationPanel.addKeyListener(this);\r
\r
viewport.addPropertyChangeListener(new java.beans.PropertyChangeListener()\r
{\r
findMenuItem_actionPerformed();\r
}\r
break;\r
+ case KeyEvent.VK_H:\r
+ {\r
+ SequenceGroup sg = viewport.getSelectionGroup();\r
+ boolean hide = false;\r
+ if (sg != null && sg.getSize(false) != viewport.alignment.getHeight())\r
+ {\r
+ hide = true;\r
+ viewport.hideAllSelectedSeqs();\r
+ }\r
+ else if (viewport.colSel.getSelected().size() < 1)\r
+ viewport.showAllHiddenSeqs();\r
+\r
+ if (viewport.colSel.getSelected().size() > 0)\r
+ viewport.hideSelectedColumns();\r
+ else if (!hide)\r
+ viewport.showAllHiddenColumns();\r
+\r
+ alignPanel.repaint();\r
+ break;\r
+ }\r
+\r
}\r
}\r
public void keyReleased(KeyEvent evt)\r
}\r
public void actionPerformed(ActionEvent evt)\r
{\r
- if(evt.getSource()==inputText)\r
+ Object source = evt.getSource();\r
+\r
+ if(source==inputText)\r
inputText_actionPerformed();\r
- else if(evt.getSource()==loadTree)\r
+ else if(source==loadTree)\r
loadTree_actionPerformed();\r
- else if(evt.getSource()==loadApplication)\r
+ else if(source==loadApplication)\r
launchFullApplication();\r
- else if(evt.getSource()==closeMenuItem)\r
+ else if(source==closeMenuItem)\r
closeMenuItem_actionPerformed();\r
- else if(evt.getSource()==copy)\r
+ else if(source==copy)\r
copy_actionPerformed();\r
- else if(evt.getSource()==undoMenuItem)\r
+ else if(source==undoMenuItem)\r
undoMenuItem_actionPerformed();\r
- else if(evt.getSource()==redoMenuItem)\r
+ else if(source==redoMenuItem)\r
redoMenuItem_actionPerformed();\r
- else if(evt.getSource()==inputText)\r
+ else if(source==inputText)\r
inputText_actionPerformed();\r
- else if(evt.getSource()==closeMenuItem)\r
+ else if(source==closeMenuItem)\r
closeMenuItem_actionPerformed();\r
- else if(evt.getSource()==undoMenuItem)\r
+ else if(source==undoMenuItem)\r
undoMenuItem_actionPerformed();\r
- else if(evt.getSource()==redoMenuItem)\r
+ else if(source==redoMenuItem)\r
redoMenuItem_actionPerformed();\r
- else if(evt.getSource()==copy)\r
+ else if(source==copy)\r
copy_actionPerformed();\r
- else if(evt.getSource()==pasteNew)\r
+ else if(source==pasteNew)\r
pasteNew_actionPerformed();\r
- else if(evt.getSource()==pasteThis)\r
+ else if(source==pasteThis)\r
pasteThis_actionPerformed();\r
- else if(evt.getSource()==cut)\r
+ else if(source==cut)\r
cut_actionPerformed();\r
- else if(evt.getSource()==delete)\r
+ else if(source==delete)\r
delete_actionPerformed();\r
- else if(evt.getSource()==deleteGroups)\r
+ else if(source==deleteGroups)\r
deleteGroups_actionPerformed();\r
- else if(evt.getSource()==selectAllSequenceMenuItem)\r
+ else if(source==selectAllSequenceMenuItem)\r
selectAllSequenceMenuItem_actionPerformed();\r
- else if(evt.getSource()==deselectAllSequenceMenuItem)\r
+ else if(source==deselectAllSequenceMenuItem)\r
deselectAllSequenceMenuItem_actionPerformed();\r
- else if(evt.getSource()==invertSequenceMenuItem)\r
+ else if(source==invertSequenceMenuItem)\r
invertSequenceMenuItem_actionPerformed();\r
- else if(evt.getSource()==remove2LeftMenuItem)\r
+ else if(source==invertColSel)\r
+ { viewport.invertColumnSelection(); alignPanel.repaint(); }\r
+ else if(source==remove2LeftMenuItem)\r
remove2LeftMenuItem_actionPerformed();\r
- else if(evt.getSource()==remove2RightMenuItem)\r
+ else if(source==remove2RightMenuItem)\r
remove2RightMenuItem_actionPerformed();\r
- else if(evt.getSource()==removeGappedColumnMenuItem)\r
+ else if(source==removeGappedColumnMenuItem)\r
removeGappedColumnMenuItem_actionPerformed();\r
- else if(evt.getSource()==removeAllGapsMenuItem)\r
+ else if(source==removeAllGapsMenuItem)\r
removeAllGapsMenuItem_actionPerformed();\r
- else if(evt.getSource()==findMenuItem)\r
+ else if(source==findMenuItem)\r
findMenuItem_actionPerformed();\r
- else if(evt.getSource()==font)\r
+ else if(source==font)\r
font_actionPerformed();\r
- else if(evt.getSource()==featureSettings)\r
+ else if(source==showColumns)\r
+ {\r
+ viewport.showAllHiddenColumns(); alignPanel.repaint();\r
+ }\r
+ else if(source==showSeqs)\r
+ {\r
+ viewport.showAllHiddenSeqs();\r
+ }\r
+ else if(source == hideColumns)\r
+ {\r
+ viewport.hideSelectedColumns(); alignPanel.repaint();\r
+ }\r
+ else if(source == hideSequences && viewport.getSelectionGroup()!=null)\r
+ {\r
+ viewport.hideAllSelectedSeqs();\r
+ }\r
+ else if(source==featureSettings)\r
featureSettings_actionPerformed();\r
- else if(evt.getSource()==overviewMenuItem)\r
+ else if(source==overviewMenuItem)\r
overviewMenuItem_actionPerformed();\r
- else if(evt.getSource()==noColourmenuItem)\r
+ else if(source==noColourmenuItem)\r
noColourmenuItem_actionPerformed();\r
- else if(evt.getSource()==clustalColour)\r
+ else if(source==clustalColour)\r
clustalColour_actionPerformed();\r
- else if(evt.getSource()==zappoColour)\r
+ else if(source==zappoColour)\r
zappoColour_actionPerformed();\r
- else if(evt.getSource()==taylorColour)\r
+ else if(source==taylorColour)\r
taylorColour_actionPerformed();\r
- else if(evt.getSource()==hydrophobicityColour)\r
+ else if(source==hydrophobicityColour)\r
hydrophobicityColour_actionPerformed();\r
- else if(evt.getSource()==helixColour)\r
+ else if(source==helixColour)\r
helixColour_actionPerformed();\r
- else if(evt.getSource()==strandColour)\r
+ else if(source==strandColour)\r
strandColour_actionPerformed();\r
- else if(evt.getSource()==turnColour)\r
+ else if(source==turnColour)\r
turnColour_actionPerformed();\r
- else if(evt.getSource()==buriedColour)\r
+ else if(source==buriedColour)\r
buriedColour_actionPerformed();\r
- else if(evt.getSource()==nucleotideColour)\r
+ else if(source==nucleotideColour)\r
nucleotideColour_actionPerformed();\r
- else if(evt.getSource()==modifyPID)\r
+ else if(source==modifyPID)\r
modifyPID_actionPerformed();\r
- else if(evt.getSource()==modifyConservation)\r
+ else if(source==modifyConservation)\r
modifyConservation_actionPerformed();\r
- else if(evt.getSource()==userDefinedColour)\r
+ else if(source==userDefinedColour)\r
userDefinedColour_actionPerformed();\r
- else if(evt.getSource()==PIDColour)\r
+ else if(source==PIDColour)\r
PIDColour_actionPerformed();\r
- else if(evt.getSource()==BLOSUM62Colour)\r
+ else if(source==BLOSUM62Colour)\r
BLOSUM62Colour_actionPerformed();\r
- else if(evt.getSource()==annotationColour)\r
+ else if(source==annotationColour)\r
new AnnotationColourChooser(viewport, alignPanel);\r
- else if(evt.getSource()==sortPairwiseMenuItem)\r
+ else if(source==sortPairwiseMenuItem)\r
sortPairwiseMenuItem_actionPerformed();\r
- else if(evt.getSource()==sortIDMenuItem)\r
+ else if(source==sortIDMenuItem)\r
sortIDMenuItem_actionPerformed();\r
- else if(evt.getSource()==sortGroupMenuItem)\r
+ else if(source==sortGroupMenuItem)\r
sortGroupMenuItem_actionPerformed();\r
- else if(evt.getSource()==removeRedundancyMenuItem)\r
+ else if(source==removeRedundancyMenuItem)\r
removeRedundancyMenuItem_actionPerformed();\r
- else if(evt.getSource()==pairwiseAlignmentMenuItem)\r
+ else if(source==pairwiseAlignmentMenuItem)\r
pairwiseAlignmentMenuItem_actionPerformed();\r
- else if(evt.getSource()==PCAMenuItem)\r
+ else if(source==PCAMenuItem)\r
PCAMenuItem_actionPerformed();\r
- else if(evt.getSource()==averageDistanceTreeMenuItem)\r
+ else if(source==averageDistanceTreeMenuItem)\r
averageDistanceTreeMenuItem_actionPerformed();\r
- else if(evt.getSource()==neighbourTreeMenuItem)\r
+ else if(source==neighbourTreeMenuItem)\r
neighbourTreeMenuItem_actionPerformed();\r
- else if(evt.getSource()==njTreeBlosumMenuItem)\r
+ else if(source==njTreeBlosumMenuItem)\r
njTreeBlosumMenuItem_actionPerformed();\r
- else if(evt.getSource()==avDistanceTreeBlosumMenuItem)\r
+ else if(source==avDistanceTreeBlosumMenuItem)\r
avTreeBlosumMenuItem_actionPerformed();\r
- else if(evt.getSource()==documentation)\r
+ else if(source==documentation)\r
documentation_actionPerformed();\r
- else if(evt.getSource()==about)\r
+ else if(source==about)\r
about_actionPerformed();\r
\r
}\r
alignPanel.repaint();\r
}\r
\r
+\r
protected void scaleAbove_actionPerformed()\r
{\r
viewport.setScaleAboveWrapped(scaleAbove.getState());\r
\r
public void pairwiseAlignmentMenuItem_actionPerformed()\r
{\r
- if (viewport.getSelectionGroup().getSize(false) > 1)\r
+ if (viewport.getSelectionGroup()!=null\r
+ && viewport.getSelectionGroup().getSize(false) > 1)\r
{\r
Frame frame = new Frame();\r
frame.add(new PairwiseAlignPanel(alignPanel));\r
\r
}\r
\r
- final TreePanel tp = new TreePanel(viewport,\r
- type,\r
- pwType);\r
+ if ( (viewport.getSelectionGroup() != null &&\r
+ viewport.getSelectionGroup().getSize(false) > 1)\r
+ || (viewport.getSelectionGroup() == null\r
+ && viewport.alignment.getHeight() > 1))\r
+ {\r
+ final TreePanel tp = new TreePanel(viewport,\r
+ type,\r
+ pwType);\r
\r
- addTreeMenuItem(tp, title);\r
+ addTreeMenuItem(tp, title);\r
\r
- jalview.bin.JalviewLite.addFrame(tp, title, 600, 500);\r
+ jalview.bin.JalviewLite.addFrame(tp, title, 600, 500);\r
+ }\r
}\r
\r
void loadTree_actionPerformed()\r
MenuItem item;\r
\r
// dynamically fill save as menu with available formats\r
- for (int i = 0; i < jalview.io.AppletFormatAdapter.formats.size(); i++)\r
+ for (int i = 0; i < jalview.io.AppletFormatAdapter.WRITEABLE_FORMATS.length; i++)\r
{\r
\r
- item = new MenuItem( (String) jalview.io.AppletFormatAdapter.formats.\r
- elementAt(\r
- i));\r
+ item = new MenuItem( jalview.io.AppletFormatAdapter.WRITEABLE_FORMATS[i]);\r
+\r
item.addActionListener(new java.awt.event.ActionListener()\r
{\r
public void actionPerformed(ActionEvent e)\r
sequenceFeatures.setState(false);\r
annotationColour.setLabel("by Annotation...");\r
annotationColour.addActionListener(this);\r
+ invertSequenceMenuItem.setLabel("Invert Sequence Selection");\r
+ invertColSel.setLabel("Invert Column Selection");\r
+ menu1.setLabel("Show");\r
+ showColumns.setLabel("All Columns ");\r
+ showSeqs.setLabel("All Sequences");\r
+ menu2.setLabel("Hide");\r
+ hideColumns.setLabel("Selected Columns");\r
+ hideSequences.setLabel("Selected Sequences");\r
+ invertColSel.addActionListener(this);\r
+ showColumns.addActionListener(this);\r
+ showSeqs.addActionListener(this);\r
+ hideColumns.addActionListener(this);\r
+ hideSequences.addActionListener(this);\r
+\r
\r
alignFrameMenuBar.add(fileMenu);\r
alignFrameMenuBar.add(editMenu);\r
editMenu.add(selectAllSequenceMenuItem);\r
editMenu.add(deselectAllSequenceMenuItem);\r
editMenu.add(invertSequenceMenuItem);\r
- editMenu.add(deleteGroups);\r
+ editMenu.add(invertColSel);\r
+ editMenu.add(deleteGroups);\r
editMenu.addSeparator();\r
editMenu.add(remove2LeftMenuItem);\r
editMenu.add(remove2RightMenuItem);\r
searchMenu.add(findMenuItem);\r
viewMenu.add(font);\r
viewMenu.addSeparator();\r
- viewMenu.add(seqLimits);\r
- viewMenu.addSeparator();\r
+ viewMenu.add(menu1);\r
+ viewMenu.add(menu2);\r
+ viewMenu.addSeparator();\r
viewMenu.add(wrapMenuItem);\r
viewMenu.add(scaleAbove);\r
viewMenu.add(scaleLeft);\r
viewMenu.add(scaleRight);\r
viewMenu.addSeparator();\r
+ viewMenu.add(seqLimits);\r
viewMenu.add(viewBoxesMenuItem);\r
viewMenu.add(viewTextMenuItem);\r
viewMenu.add(colourTextMenuItem);\r
calculate.add(njTreeBlosumMenuItem);\r
helpMenu.add(documentation);\r
helpMenu.add(about);\r
+ menu1.add(showColumns);\r
+ menu1.add(showSeqs);\r
+ menu2.add(hideColumns);\r
+ menu2.add(hideSequences);\r
}\r
\r
public void setEmbedded()\r
MenuItem featureSettings = new MenuItem();\r
CheckboxMenuItem sequenceFeatures = new CheckboxMenuItem();\r
MenuItem annotationColour = new MenuItem();\r
+ MenuItem invertColSel = new MenuItem();\r
+ Menu menu1 = new Menu();\r
+ MenuItem showColumns = new MenuItem();\r
+ MenuItem showSeqs = new MenuItem();\r
+ Menu menu2 = new Menu();\r
+ MenuItem hideColumns = new MenuItem();\r
+ MenuItem hideSequences = new MenuItem();\r
\r
public void mousePressed(MouseEvent evt)\r
{\r
git://source.jalview.org / jalview.git / blobdiff