Add jvsuffix and dbref to menu

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 4fc6208..6e2d32b 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -241,8 +241,9 @@ public class AlignFrame
                                      "Alignment output - " + e.getActionCommand(),\r
                                      600, 500);\r
     cap.setText(new AppletFormatAdapter().formatSequences(e.getActionCommand(),\r
-                                              viewport.getAlignment().\r
-                                              getSequences()));\r
+                                              viewport.getAlignment().getSequences(),\r
+                                                      viewport.showDBPrefix,\r
+                                                      viewport.showJVSuffix));\r
   }\r
 \r
   public void closeMenuItem_actionPerformed(ActionEvent e)\r
@@ -863,13 +864,21 @@ public class AlignFrame
     new FontChooser(alignPanel);\r
   }\r
 \r
-  protected void fullSeqId_actionPerformed(ActionEvent e)\r
+  public void dbref_actionPerformed(ItemEvent e)\r
   {\r
-    viewport.setShowJVSuffix(fullSeqId.getState());\r
+    viewport.showDBPrefix = dbref.getState();\r
     alignPanel.fontChanged();\r
     alignPanel.repaint();\r
   }\r
 \r
+  public void seqLimits_itemStateChanged(ItemEvent e)\r
+  {\r
+    viewport.setShowJVSuffix(seqLimits.getState());\r
+    alignPanel.fontChanged();\r
+    alignPanel.repaint();\r
+  }\r
+\r
+\r
   protected void colourTextMenuItem_actionPerformed(ActionEvent e)\r
   {\r
     viewport.setColourText(colourTextMenuItem.getState());\r