Parse HTML links from jalview features file

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index d7bf91a..a68c797 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -150,11 +150,14 @@ public class AlignFrame extends Frame implements ActionListener,
 \r
   public void parseFeaturesFile(String file, String type)\r
   {\r
+    Hashtable featureLinks = new Hashtable();\r
     boolean featuresFile = false;\r
     try{\r
       featuresFile = new jalview.io.FeaturesFile(file, type).parse(viewport.alignment,\r
                                          alignPanel.seqPanel.seqCanvas.\r
-                                         getFeatureRenderer().featureColours);\r
+                                         getFeatureRenderer().featureColours,\r
+                                         featureLinks,\r
+                                         true);\r
     }\r
     catch(Exception ex)\r
     {\r
@@ -163,6 +166,9 @@ public class AlignFrame extends Frame implements ActionListener,
 \r
     if(featuresFile)\r
     {\r
+      if(featureLinks.size()>0)\r
+        alignPanel.seqPanel.seqCanvas\r
+            .getFeatureRenderer().featureLinks = featureLinks;\r
       viewport.showSequenceFeatures = true;\r
       sequenceFeatures.setState(true);\r
       alignPanel.repaint();\r