Copy seq ordering bug fixed

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 3ab3132..caa0321 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -300,7 +300,7 @@ public class AlignFrame
                              seq.findPosition(sg.getStartRes()) + "\t"\r
                              + seq.findPosition(sg.getEndRes()) + "\t"\r
                              +\r
-                             sg.getSequenceAt(i).getSequence(sg.getStartRes(),\r
+                             seq.getSequence(sg.getStartRes(),\r
           sg.getEndRes() + 1) + "\n");\r
     }\r
 \r
@@ -567,7 +567,9 @@ public class AlignFrame
 \r
     int start=0, end = viewport.alignment.getWidth();\r
 \r
-    if(viewport.getSelectionGroup()!=null)\r
+    if (viewport.getSelectionGroup() != null\r
+        && viewport.getSelectionGroup().sequences != null\r
+        && viewport.getSelectionGroup().sequences.size()>0)\r
     {\r
       seqs = viewport.getSelectionGroup().sequences;\r
       start = viewport.getSelectionGroup().getStartRes();\r
@@ -1132,7 +1134,7 @@ public class AlignFrame
         int y = 5, x = 7;\r
         g.setColor(Color.black);\r
         g.setFont(new Font("Helvetica", Font.BOLD, 14));\r
-        g.drawString("JalView - Release 2.0", 200, y += fh);\r
+        g.drawString("JalView - Release 2.01", 200, y += fh);\r
         g.setFont(new Font("Helvetica", Font.PLAIN, 12));\r
         g.drawString("Authors:  Michele Clamp, James Cuff, Steve Searle, Andrew Waterhouse, Jim Procter & Geoff Barton.",\r
                      x, y += fh * 2);\r