JAL-1551 JAL-962 formatting and code change ripples from changing HiddenColumns ...

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 2a80e1e..f4cfc3f 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -23,8 +23,8 @@ package jalview.appletgui;
 import jalview.analysis.AlignmentSorter;
 import jalview.api.AlignViewControllerGuiI;
 import jalview.api.AlignViewControllerI;
-import jalview.api.SequenceStructureBinding;
 import jalview.api.FeatureRenderer;
+import jalview.api.SequenceStructureBinding;
 import jalview.bin.JalviewLite;
 import jalview.commands.CommandI;
 import jalview.commands.EditCommand;
@@ -91,9 +91,7 @@ import java.io.IOException;
 import java.net.URL;
 import java.net.URLEncoder;
 import java.util.Arrays;
-import java.util.Enumeration;
 import java.util.Hashtable;
-import java.util.Iterator;
 import java.util.List;
 import java.util.Map;
 import java.util.StringTokenizer;
@@ -1687,11 +1685,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {
       copiedHiddenColumns = new Vector();
       int hiddenOffset = viewport.getSelectionGroup().getStartRes();
-      for (int i = 0; i < viewport.getColumnSelection().getHiddenColumns()
-              .size(); i++)
+      for (int[] region : viewport.getColumnSelection().getHiddenColumns())
       {
-        int[] region = (int[]) viewport.getColumnSelection()
-                .getHiddenColumns().elementAt(i);
 
         copiedHiddenColumns.addElement(new int[]
         { region[0] - hiddenOffset, region[1] - hiddenOffset });
@@ -2325,7 +2320,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
             && (fr = alignPanel.getFeatureRenderer()) != null)
     {
       
-      fr.setGroupVisibility((List)Arrays.asList(groups), state);
+      fr.setGroupVisibility(Arrays.asList(groups), state);
       alignPanel.seqPanel.seqCanvas.repaint();
       if (alignPanel.overviewPanel != null)
       {