public jalview.bin.JalviewLite applet;
- boolean MAC = false;
-
private AnnotationColumnChooser annotationColumnSelectionState;
java.awt.Frame nullFrame;
{
try
{
- widthScale = new Float(param).floatValue();
+ widthScale = Float.valueOf(param).floatValue();
} catch (Exception e)
{
}
{
try
{
- heightScale = new Float(param).floatValue();
+ heightScale = Float.valueOf(param).floatValue();
} catch (Exception e)
{
}
}
setFont(font, true);
- MAC = new jalview.util.Platform().isAMac();
-
if (applet != null)
{
setShowJVSuffix(
if (colour != null)
{
residueShading = new ResidueShader(
- ColourSchemeProperty.getColourScheme(getAlignment(),
+ ColourSchemeProperty.getColourScheme(this, alignment,
colour));
if (residueShading != null)
{
public void resetSeqLimits(int height)
{
- ranges.setEndSeq(height / getCharHeight());
+ ranges.setEndSeq(height / getCharHeight() - 1); // BH 2019.04.18
}
boolean centreColumnLabels;
.getStructureSelectionManager(applet);
}
- @Override
- public boolean isNormaliseSequenceLogo()
- {
- return normaliseSequenceLogo;
- }
-
- public void setNormaliseSequenceLogo(boolean state)
- {
- normaliseSequenceLogo = state;
- }
-
/**
*
* @return true if alignment characters should be displayed
}
/**
- * Applies the supplied feature settings descriptor to currently known
- * features. This supports an 'initial configuration' of feature colouring
- * based on a preset or user favourite. This may then be modified in the usual
- * way using the Feature Settings dialogue.
+ * Applies the supplied feature settings descriptor to currently known features.
+ * This supports an 'initial configuration' of feature colouring based on a
+ * preset or user favourite. This may then be modified in the usual way using
+ * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
*
* @param featureSettings
*/
// TODO implement for applet
}
+ /**
+ * Merges the supplied feature settings descriptor with existing feature styles.
+ * This supports an 'initial configuration' of feature colouring based on a
+ * preset or user favourite. This may then be modified in the usual way using
+ * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+ *
+ * @param featureSettings
+ */
@Override
- public boolean isNormaliseHMMSequenceLogo()
+ public void mergeFeaturesStyle(FeatureSettingsModelI featureSettings)
{
- return normaliseHMMSequenceLogo;
- }
+ // TODO Auto-generated method stub
+ }
}