import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
+import jalview.schemes.CollectionColourScheme;
import jalview.schemes.ColourSchemeProperty;
import jalview.schemes.UserColourScheme;
import jalview.structure.CommandListener;
if (colour != null)
{
- globalColourScheme = ColourSchemeProperty.getColourScheme(
- alignment, colour);
+ globalColourScheme = new CollectionColourScheme(
+ ColourSchemeProperty.getColourScheme(alignment, colour));
if (globalColourScheme != null)
{
globalColourScheme.setConsensus(hconsensus);
if (applet.getParameter("userDefinedColour") != null)
{
- globalColourScheme = new UserColourScheme(
- applet.getParameter("userDefinedColour"));
+ globalColourScheme = new CollectionColourScheme(
+ new UserColourScheme(
+ applet.getParameter("userDefinedColour")));
}
}
initAutoAnnotation();