JAL-1641 updated applet version

[jalview.git] / src / jalview / appletgui / AlignViewport.java

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 1ed4583..607dc05 100644 (file)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -24,6 +24,7 @@ import java.awt.Font;
 
 import jalview.analysis.NJTree;
 import jalview.api.AlignViewportI;
+import jalview.api.FeatureRenderer;
 import jalview.bin.JalviewLite;
 import jalview.commands.CommandI;
 import jalview.datamodel.AlignmentI;
@@ -57,6 +58,10 @@ public class AlignViewport extends AlignmentViewport implements
 
   private AnnotationColumnChooser annotationColumnSelectionState;
 
+  private FeatureRenderer featureRenderer;
+
+  private boolean includeHiddenRegion = true;
+
   public void finalize()
   {
     applet = null;
@@ -467,4 +472,27 @@ public class AlignViewport extends AlignmentViewport implements
     }
   }
 
+  @Override
+  public FeatureRenderer getFeatureRenderer()
+  {
+    return featureRenderer;
+  }
+
+  @Override
+  public void setFeatureRenderer(FeatureRenderer featureRenderer)
+  {
+    this.featureRenderer = featureRenderer;
+
+  }
+
+  public boolean isIncludeHiddenRegion()
+  {
+    return includeHiddenRegion;
+  }
+
+  public void setIncludeHiddenRegion(boolean includeHiddenRegion)
+  {
+    this.includeHiddenRegion = includeHiddenRegion;
+  }
+
 }