JAL-969 - refactor colourscheme machinery from GUI code to core alignment view model

[jalview.git] / src / jalview / appletgui / AlignViewport.java

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 9258e3a..e0a6a71 100644 (file)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -63,11 +63,6 @@ public class AlignViewport extends AlignmentViewport implements AlignViewportI,
 
   boolean upperCasebold = false;
 
-  boolean colourAppliesToAllGroups = true;
-
-  boolean conservationColourSelected = false;
-
-  boolean abovePIDThreshold = false;
 
   int charHeight;
 
@@ -300,26 +295,6 @@ public class AlignViewport extends AlignmentViewport implements AlignViewportI,
     return sq;
   }
 
-  public boolean getConservationSelected()
-  {
-    return conservationColourSelected;
-  }
-
-  public void setConservationSelected(boolean b)
-  {
-    conservationColourSelected = b;
-  }
-
-  public boolean getAbovePIDThreshold()
-  {
-    return abovePIDThreshold;
-  }
-
-  public void setAbovePIDThreshold(boolean b)
-  {
-    abovePIDThreshold = b;
-  }
-
   public int getStartRes()
   {
     return startRes;
@@ -538,16 +513,6 @@ public class AlignViewport extends AlignmentViewport implements AlignViewportI,
     return currentTree;
   }
 
-  public void setColourAppliesToAllGroups(boolean b)
-  {
-    colourAppliesToAllGroups = b;
-  }
-
-  public boolean getColourAppliesToAllGroups()
-  {
-    return colourAppliesToAllGroups;
-  }
-
   public boolean getShowJVSuffix()
   {
     return showJVSuffix;