public AlignViewport(AlignmentI al, JalviewLite applet)
{
super(al);
- calculator = new jalview.workers.AlignCalcManager();
+ calculator = new jalview.workers.AlignCalcManager2();
this.applet = applet;
// we always pad gaps
if (mappedCommand != null)
{
mappedCommand.doCommand(null);
- firePropertyChange("alignment", null, getAlignment().getSequences());
+ notifyAlignment();
// ap.scalePanelHolder.repaint();
// ap.repaint();