\r
}\r
\r
- public void setColourScheme()\r
- {\r
- ColourSchemeI cs = av.getGlobalColourScheme();\r
-\r
- if (av.getConservationSelected())\r
- {\r
-\r
- Alignment al = (Alignment) av.getAlignment();\r
- Conservation c = new Conservation("All",\r
- ResidueProperties.propHash, 3,\r
- al.getSequences(), 0,\r
- al.getWidth());\r
-\r
- c.calculate();\r
- c.verdict(false, av.ConsPercGaps);\r
- ConservationColourScheme ccs = new ConservationColourScheme(c, cs);\r
-\r
- av.setGlobalColourScheme(ccs);\r
-\r
- }\r
-\r
- repaint();\r
- }\r
\r
int hextent = 0;\r
int vextent = 0;\r