int getSelectedRow(int y)
{
int row = -2;
- AlignmentAnnotation[] aa = ap.av.getAlignment().getAlignmentAnnotation();
+ AlignmentAnnotation[] aa = ap.av.getAlignment()
+ .getAlignmentAnnotation();
if (aa == null)
{
if (row > -1)
{
- ParseHtmlBodyAndLinks phb = new ParseHtmlBodyAndLinks(av.getAlignment().getAlignmentAnnotation()[row].getDescription(true), true, "\n");
+ ParseHtmlBodyAndLinks phb = new ParseHtmlBodyAndLinks(
+ av.getAlignment().getAlignmentAnnotation()[row]
+ .getDescription(true),
+ true, "\n");
if (tooltip == null)
{
tooltip = new Tooltip(phb.getNonHtmlContent(), this);
int end = getSelectedRow(evt.getY() + scrollOffset);
- if (start>-1 && start != end)
+ if (start > -1 && start != end)
{
// Swap these annotations
AlignmentAnnotation startAA = ap.av.getAlignment()
{
return;
}
- dragCancelled=false;
+ dragCancelled = false;
// todo: move below to mouseClicked ?
selectedRow = getSelectedRow(evt.getY() + scrollOffset);
- AlignmentAnnotation[] aa = ap.av.getAlignment().getAlignmentAnnotation();
+ AlignmentAnnotation[] aa = ap.av.getAlignment()
+ .getAlignmentAnnotation();
// DETECT RIGHT MOUSE BUTTON IN AWT
if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK)
// ap.annotationPanel.paint(ap.annotationPanel.getGraphics());
}
});
-
+
popup.add(cprofl);
final CheckboxMenuItem cprofn = new CheckboxMenuItem(
- "Normalise Group Logo", aa[selectedRow].groupRef.isNormaliseSequenceLogo());
+ "Normalise Group Logo",
+ aa[selectedRow].groupRef.isNormaliseSequenceLogo());
cprofn.addItemListener(new ItemListener()
{
public void itemStateChanged(ItemEvent e)
// can be
// updated.
av.setShowConsensusHistogram(chist.getState());
- ap.alignFrame.showConsensusHistogram.setState(chist.getState()); // TODO: implement ap.updateGUI()/alignFrame.updateGUI for applet
+ ap.alignFrame.showConsensusHistogram.setState(chist
+ .getState()); // TODO: implement
+ // ap.updateGUI()/alignFrame.updateGUI
+ // for applet
ap.repaint();
// ap.annotationPanel.paint(ap.annotationPanel.getGraphics());
}
// can be
// updated.
av.setShowSequenceLogo(cprof.getState());
- ap.alignFrame.showSequenceLogo.setState(cprof.getState()); // TODO: implement ap.updateGUI()/alignFrame.updateGUI for applet
+ ap.alignFrame.showSequenceLogo.setState(cprof.getState()); // TODO:
+ // implement
+ // ap.updateGUI()/alignFrame.updateGUI
+ // for
+ // applet
ap.repaint();
// ap.annotationPanel.paint(ap.annotationPanel.getGraphics());
}
// can be
// updated.
av.setShowSequenceLogo(true);
- ap.alignFrame.normSequenceLogo.setState(cprofn.getState()); // TODO: implement ap.updateGUI()/alignFrame.updateGUI for applet
+ ap.alignFrame.normSequenceLogo.setState(cprofn.getState()); // TODO:
+ // implement
+ // ap.updateGUI()/alignFrame.updateGUI
+ // for
+ // applet
av.setNormaliseSequenceLogo(cprofn.getState());
ap.repaint();
// ap.annotationPanel.paint(ap.annotationPanel.getGraphics());
{
int w = getSize().width;
int h = getSize().height;
- if (image == null || w != image.getWidth(this) || h!=image.getHeight(this) )
+ if (image == null || w != image.getWidth(this)
+ || h != image.getHeight(this))
{
image = createImage(w, ap.annotationPanel.getSize().height);
}