Capitalise menus

[jalview.git] / src / jalview / appletgui / AnnotationLabels.java

diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java
index 38013d1..ca5fe23 100755 (executable)
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -121,7 +121,26 @@ public class AnnotationLabels
     item = new MenuItem(OUTPUT_TEXT);\r
     item.addActionListener(this);\r
     pop.add(item);\r
-    pop.show(this, evt.getX(), evt.getY());\r
+\r
+    if (aa[selectedRow].label.equals("Consensus"))\r
+    {\r
+      pop.addSeparator();\r
+      final CheckboxMenuItem cbmi = new CheckboxMenuItem(\r
+          "Ignore Gaps In Consensus",\r
+          ap.av.getIgnoreGapsConsensus());\r
+\r
+      cbmi.addItemListener(new ItemListener()\r
+      {\r
+        public void itemStateChanged(ItemEvent e)\r
+        {\r
+          ap.av.setIgnoreGapsConsensus(cbmi.getState());\r
+          ap.repaint();\r
+        }\r
+      });\r
+      pop.add(cbmi);\r
+    }\r
+\r
+     pop.show(this, evt.getX(), evt.getY());\r
 \r
   }\r
 \r