\r
import java.awt.*;\r
import java.awt.event.*;\r
+import java.util.Vector;\r
\r
import jalview.datamodel.*;\r
\r
public class AnnotationLabels\r
- extends Panel implements ActionListener\r
+ extends Panel implements ActionListener, MouseListener, MouseMotionListener\r
{\r
boolean active = false;\r
AlignmentPanel ap;\r
static String DELETE = "Delete this row";\r
static String SHOWALL = "Show all hidden rows";\r
static String OUTPUT_TEXT = "Show Values In Textbox";\r
+ static String COPYCONS_SEQ = "Copy Consensus Sequence";\r
+\r
int selectedRow = 0;\r
int scrollOffset = 0;\r
\r
+ Tooltip tooltip;\r
+\r
public AnnotationLabels(AlignmentPanel ap)\r
{\r
this.ap = ap;\r
this.av = ap.av;\r
setLayout(null);\r
- addMouseListener(new MouseAdapter()\r
- {\r
- public void mousePressed(MouseEvent evt)\r
- {\r
- doMousePressed(evt);\r
- }\r
- });\r
+ addMouseListener(this);\r
+ addMouseMotionListener(this);\r
}\r
\r
public AnnotationLabels(AlignViewport av)\r
repaint();\r
}\r
\r
+ void getSelectedRow(int y)\r
+ {\r
+ selectedRow = -1;\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
+\r
+ if(aa==null)\r
+ return;\r
+\r
+ int height = 0;\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ height += aa[i].height;\r
+ if (y < height)\r
+ {\r
+ selectedRow = i;\r
+ break;\r
+ }\r
+ }\r
+ }\r
+\r
public void actionPerformed(ActionEvent evt)\r
{\r
AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation();\r
aa[selectedRow].label, 500, 100);\r
cap.setText(aa[selectedRow].toString());\r
}\r
+ else if (evt.getActionCommand().equals(COPYCONS_SEQ))\r
+ {\r
+ SequenceI cons=av.getConsensusSeq();\r
+ if (cons!=null)\r
+ copy_annotseqtoclipboard(cons);\r
\r
+ }\r
ap.annotationPanel.adjustPanelHeight();\r
setSize(getSize().width, ap.annotationPanel.getSize().height);\r
ap.validate();\r
ap.repaint();\r
}\r
\r
- public void doMousePressed(MouseEvent evt)\r
+ public void mouseMoved(MouseEvent evt)\r
{\r
- int y = evt.getY() - scrollOffset;\r
- AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
- int height = 0;\r
- for (int i = 0; i < aa.length; i++)\r
+ getSelectedRow(evt.getY() - scrollOffset);\r
+\r
+ if (selectedRow > -1)\r
{\r
- if (!aa[i].visible)\r
- {\r
- continue;\r
- }\r
+ if (tooltip == null)\r
+ tooltip = new Tooltip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].\r
+ description,\r
+ this);\r
+ else\r
+ tooltip.setTip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].description);\r
+\r
+ tooltip.repaint();\r
\r
- height += aa[i].height;\r
- if (y < height)\r
- {\r
- selectedRow = i;\r
- break;\r
- }\r
}\r
+ else if (tooltip != null)\r
+ {\r
+ tooltip.setTip("");\r
+ }\r
+\r
+ }\r
+\r
+ public void mouseDragged(MouseEvent evt)\r
+ {}\r
+ public void mouseClicked(MouseEvent evt)\r
+ {}\r
+ public void mouseReleased(MouseEvent evt)\r
+ {}\r
+ public void mouseEntered(MouseEvent evt)\r
+ {}\r
+ public void mouseExited(MouseEvent evt)\r
+ {}\r
+ public void mousePressed(MouseEvent evt)\r
+ {\r
+ int y = evt.getY() - scrollOffset;\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
\r
PopupMenu pop = new PopupMenu("Annotations");\r
MenuItem item = new MenuItem(HIDE);\r
}\r
});\r
pop.add(cbmi);\r
+ final MenuItem cpcons=new MenuItem(COPYCONS_SEQ);\r
+ cpcons.addActionListener(this);\r
+ pop.add(cpcons);\r
}\r
\r
pop.show(this, evt.getX(), evt.getY());\r
\r
}\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ protected void copy_annotseqtoclipboard(SequenceI sq)\r
+ {\r
+ if (sq==null || sq.getLength()<1)\r
+ return;\r
+ jalview.appletgui.AlignFrame.copiedSequences = new StringBuffer();\r
+ jalview.appletgui.AlignFrame.copiedSequences.append(sq.getName() + "\t" +\r
+ sq.getStart() + "\t" +\r
+ sq.getEnd() + "\t" +\r
+ sq.getSequenceAsString() + "\n");\r
+ if (av.hasHiddenColumns)\r
+ {\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns=new Vector();\r
+ for(int i=0; i<av.getColumnSelection().getHiddenColumns().size(); i++)\r
+ {\r
+ int[] region = (int[])\r
+ av.getColumnSelection().getHiddenColumns().elementAt(i);\r
+\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns.addElement(new int[]{region[0],\r
+ region[1]});\r
+ }\r
+ }\r
+ }\r
\r
public void paint(Graphics g)\r
{\r