Merge branch 'RNAalifold' into Release_2_8_1_Branch

[jalview.git] / src / jalview / appletgui / AnnotationPanel.java

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 540a0e0..154652d 100755 (executable)
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -253,10 +253,10 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI,
       }
     }
 
-    aa[activeRow].validateRangeAndDisplay();
+    av.getAlignment().validateAnnotation(aa[activeRow]);
 
-    adjustPanelHeight();
     ap.alignmentChanged();
+    adjustPanelHeight();
     repaint();
 
     return;
@@ -653,4 +653,16 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI,
   {
     return imgWidth;
   }
+  private int[] bounds = new int[2];
+  @Override
+  public int[] getVisibleVRange()
+  {
+    if (ap!=null && ap.alabels!=null)
+    {
+    int sOffset=-ap.alabels.scrollOffset;
+    int visHeight = sOffset+ap.annotationPanelHolder.getHeight();
+    bounds[0] = sOffset; bounds[1]=visHeight;
+    return bounds;
+    } else return null;
+  }
 }