aa[activeRow].hasText = true;
if (evt.getActionCommand().equals(STEM))
{
- aa[activeRow].showAllColLabels=true;
+ aa[activeRow].showAllColLabels = true;
}
}
anot[index] = new Annotation(label, "", type, 0);
}
- anot[index].secondaryStructure = type;
+
+ anot[index].secondaryStructure = type != 'S' ? type : label
+ .length() == 0 ? ' ' : label.charAt(0);
anot[index].displayCharacter = label;
}
}
return;
}
- PopupMenu pop = new PopupMenu(MessageManager.getString("label.structure_type"));
+ PopupMenu pop = new PopupMenu(
+ MessageManager.getString("label.structure_type"));
MenuItem item;
/*
* Just display the needed structure options
g.setColor(Color.black);
if (av.validCharWidth)
{
- g.drawString(MessageManager.getString("label.alignment_has_no_annotations"), 20, 15);
+ g.drawString(MessageManager
+ .getString("label.alignment_has_no_annotations"), 20, 15);
}
return;
{
return imgWidth;
}
+
private int[] bounds = new int[2];
+
@Override
public int[] getVisibleVRange()
{
- if (ap!=null && ap.alabels!=null)
+ if (ap != null && ap.alabels != null)
{
- int sOffset=-ap.alabels.scrollOffset;
- int visHeight = sOffset+ap.annotationPanelHolder.getHeight();
- bounds[0] = sOffset; bounds[1]=visHeight;
- return bounds;
- } else return null;
+ int sOffset = -ap.alabels.scrollOffset;
+ int visHeight = sOffset + ap.annotationPanelHolder.getHeight();
+ bounds[0] = sOffset;
+ bounds[1] = visHeight;
+ return bounds;
+ }
+ else
+ return null;
}
}