javatidy

[jalview.git] / src / jalview / appletgui / AnnotationPanel.java

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index a941ef2..7e6e3a1 100755 (executable)
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -1,18 +1,18 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- * 
+ *
  * This file is part of Jalview.
- * 
+ *
  * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
+ * modify it under the terms of the GNU General Public License
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  * PURPOSE.  See the GNU General Public License for more details.
- * 
+ *
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.appletgui;
@@ -21,14 +21,11 @@ import java.util.*;
 
 import java.awt.*;
 import java.awt.event.*;
-import java.awt.font.LineMetrics;
-import java.awt.geom.AffineTransform;
+import java.awt.image.BufferedImage;
 
-import jalview.analysis.AAFrequency;
 import jalview.datamodel.*;
 import jalview.renderer.AnnotationRenderer;
 import jalview.renderer.AwtRenderPanelI;
-import jalview.schemes.ColourSchemeI;
 
 public class AnnotationPanel extends Panel implements AwtRenderPanelI, AdjustmentListener,
         ActionListener, MouseListener, MouseMotionListener
@@ -44,7 +41,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
   final String HELIX = "Helix";
 
   final String SHEET = "Sheet";
-  
+
   /**
    * For RNA secondary structure "stems" aka helices
    */
@@ -106,16 +103,18 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     renderer = new AnnotationRenderer();
   }
 
+  @Override
   public void adjustmentValueChanged(AdjustmentEvent evt)
   {
   }
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param evt
    *          DOCUMENT ME!
    */
+  @Override
   public void actionPerformed(ActionEvent evt)
   {
     AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
@@ -272,6 +271,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
       return null;
   }
 
+  @Override
   public void mousePressed(MouseEvent evt)
   {
     AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
@@ -356,6 +356,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     ap.scalePanel.mousePressed(evt);
   }
 
+  @Override
   public void mouseReleased(MouseEvent evt)
   {
     graphStretch = -1;
@@ -369,12 +370,14 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     ap.scalePanel.mouseReleased(evt);
   }
 
+  @Override
   public void mouseClicked(MouseEvent evt)
   {
   }
 
   boolean needValidating = false;
 
+  @Override
   public void mouseDragged(MouseEvent evt)
   {
     if (graphStretch > -1)
@@ -396,6 +399,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     }
   }
 
+  @Override
   public void mouseMoved(MouseEvent evt)
   {
     AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
@@ -440,11 +444,13 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     }
   }
 
+  @Override
   public void mouseEntered(MouseEvent evt)
   {
     ap.scalePanel.mouseEntered(evt);
   }
 
+  @Override
   public void mouseExited(MouseEvent evt)
   {
     ap.scalePanel.mouseExited(evt);
@@ -549,11 +555,13 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     activeRes.addElement(String.valueOf(i));
   }
 
+  @Override
   public void update(Graphics g)
   {
     paint(g);
   }
 
+  @Override
   public void paint(Graphics g)
   {
     Dimension d = getSize();
@@ -621,7 +629,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
 
   /**
    * DOCUMENT ME!
-   * 
+   *
    * @param g
    *          DOCUMENT ME!
    * @param startRes
@@ -659,7 +667,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     renderer.drawComponent(this, av, g, activeRow, startRes, endRes);
     g.translate(0, +scrollOffset);
   }
-  
+
   int scrollOffset = 0;
 
   public void setScrollOffset(int value)