Conservation colour scheme is no more

[jalview.git] / src / jalview / appletgui / AnnotationPanel.java

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index cd6396f..8e9469a 100755 (executable)
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -336,7 +336,7 @@ public class AnnotationPanel
                             fm.charWidth(row.annotations[j].displayCharacter.\r
                                          charAt(0))) / 2;\r
           g.setColor(row.annotations[j].colour);\r
-          if (j == 0)\r
+          if (j == 0 || row.isGraph)\r
           {\r
             if (row.annotations[0].secondaryStructure == 'H'\r
                 || row.annotations[0].secondaryStructure == 'E')\r
@@ -352,7 +352,7 @@ public class AnnotationPanel
                     row.annotations[j - 1].secondaryStructure))\r
           {\r
 \r
-            g.drawString(row.annotations[j].displayCharacter, x,\r
+            g.drawString(row.annotations[j].displayCharacter, x + charOffset,\r
                          y + iconOffset + 2);\r
           }\r
 \r