Merge branch 'features/JAL-1605_html-svg-export' into develop

[jalview.git] / src / jalview / appletgui / AppletJmol.java

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index 3d1d0fb..322a60f 100644 (file)
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -34,7 +34,7 @@ import jalview.util.MessageManager;
 
 public class AppletJmol extends EmbmenuFrame implements
 // StructureListener,
-        KeyListener, ActionListener, ItemListener, SequenceStructureBinding
+        KeyListener, ActionListener, ItemListener
 
 {
   Menu fileMenu = new Menu(MessageManager.getString("action.file"));
@@ -139,7 +139,7 @@ public class AppletJmol extends EmbmenuFrame implements
           String[][] boundchains, boolean align, AlignmentPanel ap,
           String protocol)
   {
-    throw new Error("Not yet implemented.");
+    throw new Error(MessageManager.getString("error.not_yet_implemented"));
   }
 
   public AppletJmol(PDBEntry pdbentry, SequenceI[] seq, String[] chains,
@@ -315,8 +315,7 @@ public class AppletJmol extends EmbmenuFrame implements
           }
           if (freader == null)
           {
-            throw new Exception(
-                    "Invalid datasource. Could not obtain Reader.");
+            throw new Exception(MessageManager.getString("exception.invalid_datasource_couldnt_obtain_reader"));
           }
           jmb.viewer.openReader(pdbentry.getFile(), pdbentry.getId(),
                   freader);
@@ -520,7 +519,7 @@ public class AppletJmol extends EmbmenuFrame implements
     else if (evt.getSource() == seqColour)
     {
       setEnabled(seqColour);
-      jmb.colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+      jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
     }
     else if (!allChainsSelected)
       centerViewer();
@@ -548,7 +547,7 @@ public class AppletJmol extends EmbmenuFrame implements
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source;
-    jmb.colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+    jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
   }
 
   public void updateTitleAndMenus()
@@ -559,7 +558,7 @@ public class AppletJmol extends EmbmenuFrame implements
       return;
     }
     setChainMenuItems(jmb.chainNames);
-    jmb.colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+    jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
 
     setTitle(jmb.getViewerTitle());
   }