AlignmentPanel ap;
- List<AlignmentPanel> _aps = new ArrayList<AlignmentPanel>(); // remove? never
+ List<AlignmentPanel> _aps = new ArrayList<>(); // remove? never
// added to
String fileLoadingError;
{
reader = StructureSelectionManager
.getStructureSelectionManager(ap.av.applet)
- .setMapping(seq, chains, pdbentry.getFile(), protocol);
+ .setMapping(seq, chains, pdbentry.getFile(), protocol, null);
// PROMPT USER HERE TO ADD TO NEW OR EXISTING VIEW?
// FOR NOW, LETS JUST OPEN A NEW WINDOW
}
}
FileParse fp = new FileParse(pdbentry.getFile(), protocol);
fp.mark();
- // reader = new MCview.PDBfile(fp);
+ // reader = new mc_view.PDBfile(fp);
// could set ID, etc.
// if (!reader.isValid())
// {
void centerViewer()
{
- Vector<String> toshow = new Vector<String>();
+ Vector<String> toshow = new Vector<>();
for (int i = 0; i < chainMenu.getItemCount(); i++)
{
if (chainMenu.getItem(i) instanceof CheckboxMenuItem)