import org.jmol.api.*;
import org.jmol.adapter.smarter.SmarterJmolAdapter;
+
import org.jmol.popup.*;
import jalview.schemes.*;
{
StructureSelectionManager.getStructureSelectionManager()
.setMapping(seq, pdbentry.getFile(), protocol);
- return;
+ //PROMPT USER HERE TO ADD TO NEW OR EXISTING VIEW?
+ //FOR NOW, LETS JUST OPEN A NEW WINDOW
}
renderPanel = new RenderPanel();
this.add(renderPanel, BorderLayout.CENTER);
-
viewer = JmolViewer.allocateViewer(renderPanel, new SmarterJmolAdapter());
viewer.setAppletContext("jalview",
pdbentry.setId(pdb.id);
ssm.addStructureViewerListener(this);
- if (fr!=null)
- fr.featuresAdded();
+
Vector chains = new Vector();
for (int i = 0; i < pdb.chains.size(); i++)
{