*/
package jalview.appletgui;
+import jalview.bin.JalviewLite;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
}
}
- if (jalview.bin.JalviewLite.debug)
+ if (JalviewLite.debug)
{
System.err
.println("AppletJmol: PDB ID is '" + pdbentry.getId() + "'");
java.io.Reader freader = null;
if (reader != null)
{
- if (jalview.bin.JalviewLite.debug)
+ if (JalviewLite.debug)
{
System.err
.println("AppletJmol:Trying to reuse existing PDBfile IO parser.");
}
if (freader == null)
{
- if (jalview.bin.JalviewLite.debug)
+ if (JalviewLite.debug)
{
System.err
.println("AppletJmol:Creating new PDBfile IO parser.");
}
}
- jalview.bin.JalviewLite.addFrame(this, jmb.getViewerTitle(), 400, 400);
+ JalviewLite.addFrame(this, jmb.getViewerTitle(), 400, 400);
}
public void loadInline(String string)
{
if (evt.getSource() == mappingMenuItem)
{
- jalview.appletgui.CutAndPasteTransfer cap = new jalview.appletgui.CutAndPasteTransfer(
+ CutAndPasteTransfer cap = new CutAndPasteTransfer(
false, null);
Frame frame = new Frame();
frame.add(cap);
.println("Out of memory when trying to create dialog box with sequence-structure mapping.");
return;
}
- jalview.bin.JalviewLite.addFrame(frame,
+ JalviewLite.addFrame(frame,
MessageManager.getString("label.pdb_sequence_mapping"), 550,
600);
}