-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.appletgui;
*/
private AppletJmol appletJmolBinding;
- public AppletJmolBinding(AppletJmol appletJmol, PDBEntry[] pdbentry, SequenceI[][] seq,
- String[][] chains, String protocol)
+ public AppletJmolBinding(AppletJmol appletJmol, PDBEntry[] pdbentry,
+ SequenceI[][] seq, String[][] chains, String protocol)
{
super(pdbentry, seq, chains, protocol);
appletJmolBinding = appletJmol;
{
if (appletJmolBinding.fr == null)
{
- appletJmolBinding.fr = new jalview.appletgui.FeatureRenderer(appletJmolBinding.ap.av);
+ appletJmolBinding.fr = new jalview.appletgui.FeatureRenderer(
+ appletJmolBinding.ap.av);
}
- appletJmolBinding.fr.transferSettings(appletJmolBinding.ap.seqPanel.seqCanvas.getFeatureRenderer());
+ appletJmolBinding.fr
+ .transferSettings(appletJmolBinding.ap.seqPanel.seqCanvas
+ .getFeatureRenderer());
}
return appletJmolBinding.fr;
{
appletJmolBinding.updateTitleAndMenus();
}
-
+
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
{
try
{
- appletJmolBinding.ap.av.applet.getAppletContext().showDocument(new java.net.URL(url),
- "jmol");
+ appletJmolBinding.ap.av.applet.getAppletContext().showDocument(
+ new java.net.URL(url), "jmol");
} catch (java.net.MalformedURLException ex)
{
}
}
- public void newJmolPopup(boolean translateLocale, String menuName, boolean asPopup)
+ public void newJmolPopup(boolean translateLocale, String menuName,
+ boolean asPopup)
{
-
- jmolpopup = JmolPopup.newJmolPopup(viewer,translateLocale, menuName,asPopup);
+
+ jmolpopup = JmolPopup.newJmolPopup(viewer, translateLocale, menuName,
+ asPopup);
}
public void notifyScriptTermination(String strStatus, int msWalltime)
public void selectionChanged(BitSet arg0)
{
// TODO Auto-generated method stub
-
+
}
public void refreshPdbEntries()
{
// TODO Auto-generated method stub
-
+
}
@Override
{
return new AppletConsole(viewer2, consolePanel);
}
+
@Override
protected void releaseUIResources()
{
appletJmolBinding = null;
- if (console!=null) {
- try {
+ if (console != null)
+ {
+ try
+ {
console.setVisible(false);
- } catch (Error e) {} catch (Exception x) {};
- console=null;
+ } catch (Error e)
+ {
+ } catch (Exception x)
+ {
+ }
+ ;
+ console = null;
}
-
+
}
-}
\ No newline at end of file
+}