import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.gui.IProgressIndicator;
import jalview.structure.StructureSelectionManager;
import java.awt.Container;
import org.jmol.api.JmolAppConsoleInterface;
import org.jmol.console.AppletConsole;
import org.jmol.java.BS;
-import org.jmol.popup.JmolAwtPopup;
class AppletJmolBinding extends JalviewJmolBinding
{
appletJmolBinding.showConsole(true);
}
- appletJmolBinding.history.append("\n" + strEcho);
+ appletJmolBinding.addToHistory(strEcho);
}
@Override
if (appletJmolBinding.history != null && strStatus != null
&& !strStatus.equals("Script completed"))
{
- appletJmolBinding.history.append("\n" + strStatus);
+ appletJmolBinding.addToHistory(strStatus);
}
}
appletJmolBinding.updateTitleAndMenus();
}
+ @Override
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
- colourBySequence(ap.av.isShowSequenceFeatures(), ap);
+ colourBySequence(ap);
}
+ @Override
public void showUrl(String url)
{
try
public void newJmolPopup(boolean translateLocale, String menuName,
boolean asPopup)
{
- jmolpopup = new JmolAwtPopup(); // is this used?
- jmolpopup.jpiInitialize((viewer), menuName);
-
+ // jmolpopup = new JmolAwtPopup(); // is this used?
+ // jmolpopup.jpiInitialize((viewer), menuName);
}
@Override
// do nothing.
}
+ @Override
public void selectionChanged(BS arg0)
{
// TODO Auto-generated method stub
// TODO Auto-generated method stub
return null;
}
+
+ @Override
+ protected IProgressIndicator getIProgressIndicator()
+ {
+ // no progress indicators on the applet
+ return null;
+ }
}