JAL-3148 show/hide features on structure independent of alignment

[jalview.git] / src / jalview / appletgui / AppletJmolBinding.java

diff --git a/src/jalview/appletgui/AppletJmolBinding.java b/src/jalview/appletgui/AppletJmolBinding.java
index 2f61b24..696a272 100644 (file)
--- a/src/jalview/appletgui/AppletJmolBinding.java
+++ b/src/jalview/appletgui/AppletJmolBinding.java
@@ -59,13 +59,6 @@ class AppletJmolBinding extends JalviewJmolBinding
   }
 
   @Override
-  public jalview.api.SequenceRenderer getSequenceRenderer(
-          AlignmentViewPanel alignment)
-  {
-    return new SequenceRenderer(((AlignmentPanel) alignment).av);
-  }
-
-  @Override
   public void sendConsoleEcho(String strEcho)
   {
     if (appletJmolBinding.scriptWindow == null)
@@ -103,7 +96,7 @@ class AppletJmolBinding extends JalviewJmolBinding
   public void updateColours(Object source)
   {
     AlignmentPanel ap = (AlignmentPanel) source;
-    colourBySequence(ap);
+    colourBySequence(ap, ap.av.isShowSequenceFeatures());
   }
 
   @Override