/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
*/
private AppletJmol appletJmolBinding;
- public AppletJmolBinding(AppletJmol appletJmol, StructureSelectionManager sSm, PDBEntry[] pdbentry,
+ public AppletJmolBinding(AppletJmol appletJmol,
+ StructureSelectionManager sSm, PDBEntry[] pdbentry,
SequenceI[][] seq, String[][] chains, String protocol)
{
super(sSm, pdbentry, seq, chains, protocol);
appletJmolBinding = appletJmol;
}
- public jalview.api.FeatureRenderer getFeatureRenderer(AlignmentViewPanel alignment)
+ public jalview.api.FeatureRenderer getFeatureRenderer(
+ AlignmentViewPanel alignment)
{
- AlignmentPanel ap = (AlignmentPanel)alignment;
+ AlignmentPanel ap = (AlignmentPanel) alignment;
if (appletJmolBinding.ap.av.showSequenceFeatures)
{
if (appletJmolBinding.fr == null)
return appletJmolBinding.fr;
}
- public jalview.api.SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
+ public jalview.api.SequenceRenderer getSequenceRenderer(
+ AlignmentViewPanel alignment)
{
- return new SequenceRenderer(((AlignmentPanel)alignment).av);
+ return new SequenceRenderer(((AlignmentPanel) alignment).av);
}
public void sendConsoleEcho(String strEcho)
{
jmolpopup = new JmolPopup();
- jmolpopup.initialize(viewer, translateLocale, menuName,
- asPopup);
+ jmolpopup.initialize(viewer, translateLocale, menuName, asPopup);
}
public void notifyScriptTermination(String strStatus, int msWalltime)
protected JmolAppConsoleInterface createJmolConsole(JmolViewer viewer2,
Container consolePanel, String buttonsToShow)
{
- //return new org.jmol.console.AppletConsole(viewer2, consolePanel);
- JmolAppConsoleInterface appc = new org.jmol.console.AppletConsole().getAppConsole(viewer2);
+ // return new org.jmol.console.AppletConsole(viewer2, consolePanel);
+ JmolAppConsoleInterface appc = new org.jmol.console.AppletConsole()
+ .getAppConsole(viewer2);
return appc;
}
public void releaseReferences(Object svl)
{
}
+
@Override
public void resizeInnerPanel(String data)
{
// TODO Auto-generated method stub
-
+
}
}