Edit and annotate wrapped alignment

[jalview.git] / src / jalview / appletgui / CutAndPasteTransfer.java

diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java
index e4b8c9b..46f3d70 100755 (executable)
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -1,32 +1,44 @@
-/********************\r
- * 2004 Jalview Reengineered\r
- * Barton Group\r
- * Dundee University\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
  *\r
- * AM Waterhouse\r
- *******************/\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 \r
 package jalview.appletgui;\r
 \r
-import jalview.jbappletgui.GCutAndPasteTransfer;\r
-import jalview.datamodel.*;\r
-import jalview.io.*;\r
 import java.awt.*;\r
 import java.awt.event.*;\r
 \r
-public class CutAndPasteTransfer extends GCutAndPasteTransfer\r
+import jalview.datamodel.*;\r
+import jalview.io.*;\r
+import jalview.jbappletgui.*;\r
+\r
+public class CutAndPasteTransfer\r
+    extends GCutAndPasteTransfer\r
 {\r
   public CutAndPasteTransfer(boolean forImport)\r
   {\r
     super();\r
 \r
-    if(!forImport)\r
+    if (!forImport)\r
     {\r
       buttonPanel.setVisible(false);\r
     }\r
   }\r
 \r
-\r
   public String getText()\r
   {\r
     return textarea.getText();\r
@@ -37,36 +49,48 @@ public class CutAndPasteTransfer extends GCutAndPasteTransfer
     textarea.setText(text);\r
   }\r
 \r
-\r
   protected void ok_actionPerformed(ActionEvent e)\r
   {\r
     String text = getText();\r
-    SequenceI [] sequences = null;\r
-\r
-    String format = IdentifyFile.Identify(text, "Paste");\r
-\r
-  // if (FormatProperties.contains( format ))\r
-     sequences = FormatAdapter.readFile(text, "Paste", format);\r
-\r
-     if(sequences!=null)\r
-     {\r
-       AlignFrame af = new AlignFrame(new Alignment(sequences));\r
-       jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - "+format,\r
-                        AlignFrame.NEW_WINDOW_WIDTH,\r
-                        AlignFrame.NEW_WINDOW_HEIGHT);\r
-       af.statusBar.setText("Successfully pasted alignment file");\r
-     }\r
+    int length = text.length();\r
+    textarea.append("\n");\r
+    if(textarea.getText().length()==length)\r
+    {\r
+      String warning = "\n\n#################################################\n"\r
+          +"WARNING!! THIS IS THE MAXIMUM SIZE OF TEXTAREA!!\n"\r
+          +"\nCAN'T INPUT FULL ALIGNMENT"\r
+          +"\n\nYOU MUST DELETE THIS WARNING TO CONTINUE"\r
+          +"\n\nMAKE SURE LAST SEQUENCE PASTED IS COMPLETE"\r
+          +"\n#################################################\n";\r
+      textarea.setText(text.substring(0, text.length()-warning.length())\r
+          +warning);\r
+\r
+      textarea.setCaretPosition(text.length());\r
+      return;\r
+    }\r
 \r
-     Frame frame = (Frame)this.getParent();\r
-     frame.setVisible(false);\r
-   }\r
+    SequenceI[] sequences = null;\r
 \r
-   protected void cancel_actionPerformed(ActionEvent e) {\r
-     Frame frame = (Frame)this.getParent();\r
-     frame.setVisible(false);\r
-   }\r
+    String format = IdentifyFile.Identify(text, "Paste");\r
+    sequences = FormatAdapter.readFile(text, "Paste", format);\r
 \r
+    if (sequences != null)\r
+    {\r
+      AlignFrame af = new AlignFrame(new Alignment(sequences));\r
+      jalview.bin.JalviewLite.addFrame(af, "Cut & Paste input - " + format,\r
+                                       AlignFrame.NEW_WINDOW_WIDTH,\r
+                                       AlignFrame.NEW_WINDOW_HEIGHT);\r
+      af.statusBar.setText("Successfully pasted alignment file");\r
+    }\r
 \r
+    Frame frame = (Frame)this.getParent();\r
+    frame.setVisible(false);\r
+  }\r
 \r
+  protected void cancel_actionPerformed(ActionEvent e)\r
+  {\r
+    Frame frame = (Frame)this.getParent();\r
+    frame.setVisible(false);\r
+  }\r
 \r
 }\r